Journal: PLoS ONE
Article Title: SALL4, a Stem Cell Factor, Affects the Side Population by Regulation of the ATP-Binding Cassette Drug Transport Genes
doi: 10.1371/journal.pone.0018372
Figure Lengend Snippet: ( A ) 293 cells were transiently transfected with SALL4A or SALL4B or pcDNA as a control. At 48 hr after transfection, RNA was isolated from transfected cells. Transfected cells were subjected to qRT-PCR to measure the mRNA expressions of ABCA3 and ABCG2. The mRNA expressions of ABCA3 and ABCG2 were significantly increased by SALL4. Data are represented as mean ± S.D. from three independent experiments. *** denotes p<0.001, ** p<0.01, *p<0.05. ( B ) CD34+ cells were transduced with retrovirus expressing shRNA against SALL4 and subjected to qRT-PCR analysis to measure the expression levels of ABCA3 and ABCG2. The expression level of ABCA3 was reduced by 80% and the expression level of ABCG2 was reduced by 74% in CD34+ cells compared to those of the controls. The mRNA level was normalized with the internal control GAPDH. ( C ) qRT-PCR analysis of SALL4A and B, ABCG2, and ABCA3 in HL-60, KG1a, and RPMI8226 cells. For quantification of gene expression, amplification of GAPDH was performed as an endogenous control to standardize the amount of sample. ( D and E ) SALL4 and ABC gene expressions were correlated in primary AML samples. 461 primary AML samples (GSE6891) were stratified into SALL4 high and SALL4 low using the mean intensity of SALL4 as a threshold. ( F and G ) qRT-PCR was performed on 34 primary samples with primers for SALL4, ABCG2 and ABCA3. Mean value of SALL4 was used to stratify the samples to SALL4 high or SALL4 low groups. Data are represented as mean ± S.D. from three independent experiments. Y axis: Relative SALL4 expression when compared to controls.
Article Snippet: The cells were then sorted using the EasySep Human Whole Blood/Buffy Coat CD34 Positive Selection Kit (Stemcell Technologies, Vancouver, Canada).
Techniques: Transfection, Isolation, Quantitative RT-PCR, Transduction, Expressing, shRNA, Amplification